Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
THCA rs2749785 chr4:3325179 G/C 0.000101 499 27.1 31.72 32.58 KM Plot
THCA rs2776776 chr13:108858950 A/C 2.64E-6 493 31.4 31.72 24.63 KM Plot
THCA rs2778471 chr10:7884051 C/T 0.000149 501 31.47 33.07 19.1 KM Plot
THCA rs2778473 chr10:7859725 C/G 0.000153 501 31.47 32.87 19.1 KM Plot
THCA rs2812736 chr13:19958032 A/G 5.35E-5 497 31.73 31.3 30.43 KM Plot
THCA rs281471 chr2:46403889 A/T 2.25E-8 503 31.62 31.03 22.72 KM Plot
THCA rs2835558 chr21:38381213 G/A 3.57E-5 489 32.03 31.37 28.23 KM Plot
THCA rs28362161 chr22:46807439 C/T 9.99E-5 492 31.47 31.7 32.1 KM Plot
THCA rs28372210 chr7:16464511 A/G 6.01E-5 488 31.15 33.7 31.93 KM Plot
THCA rs28405137 chr8:60165387 G/C 6.52E-5 502 31.88 30.13 20.5 KM Plot
THCA rs28429633 chr8:60165805 G/A 6.32E-5 503 31.93 30.13 20.5 KM Plot
THCA rs28433486 chr8:60161383 C/T 6.32E-5 503 31.93 30.13 20.5 KM Plot
THCA rs28485452 chr21:43615131 G/A 7.48E-5 489 31.42 34.43 23.73 KM Plot
THCA rs28548207 chr10:131973052 T/C 1.22E-5 502 31.47 32.37 27.18 KM Plot
THCA rs28548698 chr7:32772248 C/G 0.000115 493 31.45 32.9 31.97 KM Plot